DreALTD0023139-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000068400 | znf131
Description
zinc finger protein 131 [Source:ZFIN;Acc:ZDB-GENE-040426-1563]
Coordinates
chr8:31407041-31407916:-
Coord C1 exon
chr8:31407816-31407916
Coord A exon
chr8:31407447-31407815
Coord C2 exon
chr8:31407041-31407194
Length
369 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TTGTGCTTGTGTTTTTATAGTAC
3' ss Score
7.55
Exon sequences
Seq C1 exon
GACCGCCCTTTTCCGACGAGCGGAGGAAAAACAGCACATTGATCGCTTCAGGCCTCCAACGCGAATAAACAACCGCACTGTACATCCGAGCGTCACCCGGG
Seq A exon
GTAAGTCCTCCGGAGCGTTAGCCGCCCGGCGACACTCATCATTTAGCTGAAACGAATATGTCTGATTAAAAGAGCATTTTAATGCGCGATTTGATGACGTAACGACAATGGTCCCGAAAACAAATGGCGAATGCGTTAGCAGCCACAGGCCTTGCGCGCGGATAACATGAAGCTGGCCAGCGCACGGTGCTGCTTTTGCCGTTTTTATATTTCTCTCTGGGTCGTGCAAGTACTTGGCTTTTGCGGCTGTTTAACCTGCTGGATGTAAAGTTGGCCGCCTGGCTCCCCGCAGAAATGCGCGCTAATTCGGCATGTTACTTAGATATGCCCGCTACTCTGTGGATATGTTGGCATAGGGGCGATTACAAA
Seq C2 exon
TACTTGCATGCGCAGGGAAAGGGCTGAACCATGTCTGTTGATGGAGATGTTGACTATGGGCATGAGTTTCCAGCTCATTATAAAGTGATGCTTGACAAACTGAATGAGCAACGTCAGCTGGATCAGTTCACTGACATCACTCTCATTGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068400-1-0,2-0,3-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=PU(17.1=42.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGCCCTTTTCCGACG
R:
ATCCACAATGAGAGTGATGTCAGTG
Band lengths:
254-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]