DreINT0181134 @ danRer10
Intron Retention
Gene
ENSDARG00000068400 | znf131
Description
zinc finger protein 131 [Source:ZFIN;Acc:ZDB-GENE-040426-1563]
Coordinates
chr8:31407041-31407907:-
Coord C1 exon
chr8:31407447-31407907
Coord A exon
chr8:31407195-31407446
Coord C2 exon
chr8:31407041-31407194
Length
252 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TTGTGCTTGTGTTTTTATAGTAC
3' ss Score
7.55
Exon sequences
Seq C1 exon
TTTCCGACGAGCGGAGGAAAAACAGCACATTGATCGCTTCAGGCCTCCAACGCGAATAAACAACCGCACTGTACATCCGAGCGTCACCCGGGGTAAGTCCTCCGGAGCGTTAGCCGCCCGGCGACACTCATCATTTAGCTGAAACGAATATGTCTGATTAAAAGAGCATTTTAATGCGCGATTTGATGACGTAACGACAATGGTCCCGAAAACAAATGGCGAATGCGTTAGCAGCCACAGGCCTTGCGCGCGGATAACATGAAGCTGGCCAGCGCACGGTGCTGCTTTTGCCGTTTTTATATTTCTCTCTGGGTCGTGCAAGTACTTGGCTTTTGCGGCTGTTTAACCTGCTGGATGTAAAGTTGGCCGCCTGGCTCCCCGCAGAAATGCGCGCTAATTCGGCATGTTACTTAGATATGCCCGCTACTCTGTGGATATGTTGGCATAGGGGCGATTACAAA
Seq A exon
GTATGTGCTGAATTTATCTCAATTGTGATCTGTGCTATAGACGTCATTGGAAGATTACTGATAAATAATTTGGCTTTTGAAATGCTCTGACATCTTGCAGTTTGATTAAATTGAAGCTGCCTGCCAGTTTAGAATAGCTGAGCAATTGCTTTTTGTCATCAATAAACCATATCTTTATGTTAAATTAATGAGTTTTATGATTTGATATATTTCTTATTCCAGCGTGTTCTTATTGTGCTTGTGTTTTTATAG
Seq C2 exon
TACTTGCATGCGCAGGGAAAGGGCTGAACCATGTCTGTTGATGGAGATGTTGACTATGGGCATGAGTTTCCAGCTCATTATAAAGTGATGCTTGACAAACTGAATGAGCAACGTCAGCTGGATCAGTTCACTGACATCACTCTCATTGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068400:ENSDART00000098912:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=PU(17.1=42.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGCTTTTGCCGTTTTT
R:
TCCAGCTGACGTTGCTCATTC
Band lengths:
306-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]