GgaINT1030478 @ galGal4
Intron Retention
Gene
ENSGALG00000014859 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chrZ:13472984-13473886:+
Coord C1 exon
chrZ:13472984-13473071
Coord A exon
chrZ:13473072-13473747
Coord C2 exon
chrZ:13473748-13473886
Length
676 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
TGCTAATGTGTATTTCACAGGTT
3' ss Score
8.65
Exon sequences
Seq C1 exon
TGTTTGGATTCTCTCCGAAGGTTCTTTTGCATATGCAGCAGAGGTGCAACTATGTGTCTCCACAGGCAGTTTTGATAAACCTCCTCAG
Seq A exon
GTCTGAGAACCTTCCCTCTACTCCCAGCTACGATTATTGTATCAGTAAGGAAGGAAGGGCCATAGGATACAGCCCACTTATCTCTTTCAAGAGGTTGGCAACAAATATTTCACCTAGCAGGGGAGAAGCTGTGTGAATGAGAGCCTTCTTGTTCTTGGGTGTAGAAACTCTTTAAAGCCCTGGCAAGTCCGACCTGCTCAGAAGTTGAGAAGTGCTACCTTAGGACTTTCATACTTAAACAAAGTAAACATGTTGTATTCACTAGATATGGAATGTACGTTAAGTAAGGGTTTGTTAGTAACTGTTCTTCCACCTAATAAATTGATAGAATTGCAGGAAGTGACTGTAAAGATCCTGTCACTGTAGTGATGAGTTGTTAAGTAGTTAGCTGTAGACATGTTATGTCCCTACATTATTTGCTTTGAGAGAGGTGAGTCCTCACTGAATTGAAGAATAAAGAAATGCAGTTTGACTGCTGTTTGATATATATAAAAAATAAGGCCATACTAAATTAACTCTAATATTTCCTACCTGCTAGTTAACCTGTTGTTATGGCAGTTTGTTGTATCTCTTGGTTTTGTAGTCCCTAAAAAGTGCCAGTTGGTTCATGTTTGTAAGCTAAGTTGCACTGACGGAGTGGCAAAGTATTCTTACTCTGCTAATGTGTATTTCACAG
Seq C2 exon
GTTAGTCTTTCTGCCATGGAAGCTGAGGAAAAAATGGAATGCATCCAGGAATTCCCAGAACACTATAAAGTTATTTTGGATAGATTGAATGAACAACGTGAGCAGGACCAGTTCACAGACATCACTCTAATTGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859:ENSGALT00000023979:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=PU(17.0=39.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCAACTATGTGTCTCCAC
R:
TCCACAATTAGAGTGATGTCTGTGA
Band lengths:
184-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]