GgaALTD1026229-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000014859 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chrZ:13472971-13473886:+
Coord C1 exon
chrZ:13472971-13473071
Coord A exon
NA
Coord C2 exon
chrZ:13473748-13473886
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
TGCTAATGTGTATTTCACAGGTT
3' ss Score
8.65
Exon sequences
Seq C1 exon
GCTTTCCTTGCAGTGTTTGGATTCTCTCCGAAGGTTCTTTTGCATATGCAGCAGAGGTGCAACTATGTGTCTCCACAGGCAGTTTTGATAAACCTCCTCAG
Seq A exon
NA
Seq C2 exon
GTTAGTCTTTCTGCCATGGAAGCTGAGGAAAAAATGGAATGCATCCAGGAATTCCCAGAACACTATAAAGTTATTTTGGATAGATTGAATGAACAACGTGAGCAGGACCAGTTCACAGACATCACTCTAATTGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859-2-0,3-0,4-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=PU(17.0=39.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCAACTATGTGTCTCCA
R:
TCTGTGAACTGGTCCTGCTCA
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]