HsaINT0186184 @ hg19
Intron Retention
Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:12915]
Coordinates
chr5:43121642-43122279:+
Coord C1 exon
chr5:43121642-43121670
Coord A exon
chr5:43121671-43122140
Coord C2 exon
chr5:43122141-43122279
Length
470 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
ATCATGCTCTTCTTTTGTAGAGC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GCAAGCCTGGGCCGCTCCTCCTTCCCTCA
Seq A exon
GTGAGTGCCGGCCCGGTCGGGGCGGGGGAGAAGAGGGAGGGCGGGGGAGGGAGAGGCGACCCGAGAGTCGTTGTGGGTCGCGGGCCGGACCGGGTCCCGGGGCGGTGGGAGCCCCGGCCGGGCAGAAGGGCTTGGCGGGCCGTTAGAGGACCGCCACGGCTGTCGAGTCCCCTCCCTTGTTGGACTTGCGCGCCCTGGCGCTCGGAACCTCCGGCGCTGTGCCCACCCCGCTCTAGCTCGCGTCTCCCGACTCCAATTAGGTCAGGCTCGGAGTCCCGCGGCCGCGGCTCCGGTCTCAACGCTCCGGGGCCGCTCGGCTCGCCTTTCTTCCCTCGCCTTTCTCTCCTCTTGCTTCACCCTCCCCCCTTCTTTTCACGTTGCTGGTTTTTTTTGTTGTTGTTTTATGCTTTAGGGGTTTTGTTCCTCGGCTCGAGCTCATGGGTGTACATTATCATGCTCTTCTTTTGTAG
Seq C2 exon
AGCAGCCCGACGGCCATGGAGGCTGAAGAGACGATGGAATGCCTTCAGGAGTTCCCTGAACATCATAAAATGATCCTCGACCGATTGAATGAACAGCGAGAGCAGGACCGGTTTACTGACATCACCCTAATTGTCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262-ZNF131:NM_003432:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=PU(17.0=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)