DreEX0000013 @ danRer10
Exon Skipping
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21077270-21077715:-
Coord C1 exon
chr15:21077559-21077715
Coord A exon
chr15:21077417-21077469
Coord C2 exon
chr15:21077270-21077290
Length
53 bp
Sequences
Splice sites
3' ss Seq
GCTTTGATCTTTTGTTTTAGTGT
3' ss Score
9.84
5' ss Seq
ACGGTCAGA
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCTCCTCTGGTAGAAGCTGAATCAGTTCAAACAATGAAAGTTGAGCTTCAGGGGAAGAACTTCAAGATGACAGAAGAGAGAAAAGTCATGTTGAGGCGTTACTATCCTTTGACCTTTATCCAGACTGATAAACCCATCTATATTCCTGGACAGACGG
Seq A exon
TGTTTTTTAGAGTCATATCCATGGATGCTAACTTTGTGCCTCTTGATCAGACG
Seq C2 exon
TATGATACGGTGGTGCTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199-'3-7,'3-6,4-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.2=30.2)
A:
PF0183514=A2M_N=FE(18.3=100)
C2:
PF0183514=A2M_N=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGTTGAGCTTCAGGGGA
R:
TTCAAGCACCACCGTATCATA
Band lengths:
144-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]