DreEX0000015 @ danRer10
Exon Skipping
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21076346-21077469:-
Coord C1 exon
chr15:21077417-21077469
Coord A exon
chr15:21077270-21077290
Coord C2 exon
chr15:21076346-21076511
Length
21 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTTTGTCTTTGCAGTAT
3' ss Score
9.4
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TGTTTTTTAGAGTCATATCCATGGATGCTAACTTTGTGCCTCTTGATCAGACG
Seq A exon
TATGATACGGTGGTGCTTGAA
Seq C2 exon
GACAGCCAAGATAACAGGATTGGTCAATGGACAAATGTTTCGTCAACAAGGTGGATTTTGCAGCTTTCTCATGAGTTGAACCCAGAAGCCCGTCAAGGACTCTACAAACTAAAGGCTTATATTGGTGAAAGGATGATCTCAAATGGTTTTGAAGTGAAAAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199-'4-8,'4-7,5-8
Average complexity
C2
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(18.3=100)
A:
PF0183514=A2M_N=FE(6.5=100)
C2:
PF0183514=A2M_N=PD(54.8=91.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGTGCCTCTTGATCAGACG
R:
GGGCTTCTGGGTTCAACTCAT
Band lengths:
114-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]