DreEX0000428 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3470441-3477578:-
Coord C1 exon
chr25:3477395-3477578
Coord A exon
chr25:3473597-3473743
Coord C2 exon
chr25:3470441-3470827
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTTTGTGTGTTTAGCTT
3' ss Score
8.4
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTTCCTTCTGAGACAGGAACAGGAAAAGCATCAGAGCGCTCTAATGTTGTATAATAAAACACGTGAGCAGCTCCAGAGAAAAGAGGAGCAGCAGAGGGCCGAGGCTGAAGAACGGCACAAAGCTGAGCTGAAAGTGCGCAGCCTGGAGCTGGAGATCAGAGCTCTGAAGAACAGCATCAAACAG
Seq A exon
CTTGAGGAGGACAGAGATGAGTCTCAGCGTCTCCTGTCCCATGAGCGCAGCACTCGTGCCCTGCAGGAGGAGCTACTCAACAACCATTTGCGCAAACAGCAGGACATTGAAGAGGAGAACCTGCGAAACCTCAACAAGAGCAATGAG
Seq C2 exon
GCCATGTCCCAGCTAACCGAGGCATCAGACCGCGAGCGAGAGCTAATGCTGCAGAACCGCACGCTTCAGGATGAGCTGAGCGGTGCTCGGGCCGAGCTGGAGCGCTTGCAGTGTCAGAGTCGGCAGGATGAGTCTCGGCTGGCGGAGGACAGAGACACCCTGCGGGAGAGACTGGAGGATGCCCGCAGAGACATGAAGCTAAGCGAGGAGGCCCTGGCCCAGACTGTCTTCCAGTATAACGGGCAGCTGAGCGCACTGAAGGCCGAATGCTCCGTCCTCAGTGCTAAATTGGAGCACGAGAGGCAGACGAGGCAGCAGCTGGAGGCTGAGGCTGAAGCTGGCAGAGCACGACTGCAGGCCGCCATACAGGAGGCAGAGAGATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768-'36-35,'36-34,37-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.597 A=0.980 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149151=CCDC144C=PU(36.1=85.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAGCATCAGAGCGCTCT
R:
CTCAGCTCATCCTGAAGCGTG
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]