HsaEX6087934 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27323725-27326983:-
Coord C1 exon
chr10:27326800-27326983
Coord A exon
chr10:27326115-27326252
Coord C2 exon
chr10:27323725-27324681
Length
138 bp
Sequences
Splice sites
3' ss Seq
AAAACTTAATGTATCTCTAGGTC
3' ss Score
7.25
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
ATTTAGCTTAAACCAAGAAGAAGAGAAGAGAAGAAATGCTGATACGTTGTATGAAAAAATTAGGGAACAGTTAAGAAGAAAAGAAGAGCAATATAGGAAAGAAGTTGAAGTGAAACAACAGCTTGAACTGAGTCTCCAAACACTGGAGATGGAATTGAGGACTGTAAAAAGTAATTTGAATCAG
Seq A exon
GTCGTTCAAGAGCGAAATGACGCTCAGAGGCAACTTTCTCGAGAACAGAATGCCAGAATGTTACAAGATGGAATTCTGACCAATCACCTTTCCAAACAAAAGGAGATTGAAATGGCTCAAAAGAAAATGAATTCTGAG
Seq C2 exon
AATTCTCATAGTCATGAAGAAGAAAAAGACCTATCGCATAAAAATAGCATGTTGCAGGAAGAAATTGCTATGCTAAGACTAGAAATAGACACAATAAAAAATCAAAACCAGGAAAAAGAAAAGAAATGTTTTGAGGACCTTAAAATTGTAAAAGAAAAGAATGAAGACCTTCAGAAGACTATAAAACAGAATGAGGAAACATTAACACAAACAATATCCCAGTATAATGGACGGCTTAGTGTTCTGACAGCTGAGAATGCAATGCTAAATTCTAAACTGGAGAATGAAAAGCAAAGCAAGGAAAGACTGGAAGCAGAAGTTGAATCATACCATTCTAGATTGGCTGCTGCTATACATGATCGTGATCAAAGTGAGACATCAAAAAGAGAACTAGAACTTGCTTTCCAGAGAGCAAGAGATGAATGTTCTCGTTTACAGGACAAAATGAATTTTGATGTGTCTAACCTAAAAGATAACAATGAGATTCTTTCTCAACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'32-34,'32-33,34-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=1.000 C2=0.401
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149151=CCDC144C=WD(100=95.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGAAGAAGAGAAGAGAAGAA
R:
AGCAATTTCTTCCTGCAACATGC
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)