MmuEX0005066 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118522939-118525916:-
Coord C1 exon
chr6:118525733-118525916
Coord A exon
chr6:118524945-118525082
Coord C2 exon
chr6:118522939-118523895
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTCATCACTGTATCTCTAGGTC
3' ss Score
8.95
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
ATTTGCACTGAAACAAGAGGAAGAGAAGAGGAGGAGTGCAGACCAGCTTTCTGAGAAAACCTCGGAGCAGCTTAGAAGGAAAGGCGAGCAGTGTCAGAGTGAGGTGGAAGCCAGGCAGCAGCTTGAAGCCTCTCTCAGAACCCTGGAGATGGAGCTGAAGACGGTGAAAAGCCATCTCAACCAG
Seq A exon
GTCTTAGAGGAACGAAATGAGACTCAGAGGCAGCTCTCCCGAGAACAGAATGCCAGAATGTTACAAGATGGGATTCTTGCAAGTCACCTCTGCAAGCAAAAGGAGATAGAAATGACGCAGAAGAAAATGACTTCTGAG
Seq C2 exon
GTTTCTGTTAGTCATGAAAAAGAAAAAGATCTATTGCATAAAAACCAGAGGCTGCAGGATGAAGTTGCTGTGTTACGACTGGAAATGGACACAATAAAAAGCCATAACCAGGAGAAGGAAAAGAGGTATCTTGAGGATATTAAGATTGCAAATGAGAAGAATGACAACCTTCAAAGGATGGTCAAGCTGAATGAAGAAACATTTACAAAAACCATATTCCAGTATACTGGACAGCTTAATAGTCTTAAAGCTGAGAACACAATGCTGAGTTCTAAGCTGGACAACGAAAAACAAAATAAGGAGAGACTGGAAACAGACGTTGAGTCGTTCCGATCTAGGCTGGCTTCTGCTCTGCATGATCACGCTGAAATTCAGACAGCAAAAAGAGACCTAGAAATTGCTTTCCAGAGAGCGAGAGATGAGTGGTTTCGTGTGAAAGACAAGATGAATTTCGATATGTCTAACCTCCGAGATAACAATGAGGTTCTCTCCCAACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'30-33,'30-32,31-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=0.609 C2=0.417
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(18.5=100)
A:
PF0157614=Myosin_tail_1=FE(13.7=100)
C2:
PF0157614=Myosin_tail_1=PD(42.9=44.2),PF149151=CCDC144C=WD(100=95.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGGAGGAGTGCAGACC
R:
TCCAGTCGTAACACAGCAACT
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types