RnoEX6014802 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150567869-150571000:-
Coord C1 exon
chr4:150570817-150571000
Coord A exon
chr4:150570044-150570181
Coord C2 exon
chr4:150567869-150568825
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTCATCGCTGTGCCTCCAGGTA
3' ss Score
8.7
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATTTGCACTGAAACAAGAGGAAGAGAAGAGGAGAAGTGCGGATCAGCTTTCCGAGAGGATGGTGGAGCAGCTTAGAAGGAAAGGAGAGCAGTATCAGGGCGAGGTGGAAGCCAGACAGCAGCTTGAAGTCTCCCTCAGAAGCCTGGAGATGGAGCTGAAGACAGTGAGAAGTCACCTCAACCAG
Seq A exon
GTATTAGAGGAACGGAATGAGACTCAGCGGCAGCTTTCCCGAGAACAGAATGCCAGAATGTTGCAGGATGGGATTCTTGCTAATCACCTCTGCAAGCAAAAGGAGATAGAAATGGAGCAGAAGAAGATGACTTCCGAG
Seq C2 exon
GCTTCTCTTAGTCATGAAAAAGAAAAAGATCTATTGCATAAAAACCAGAGGCTGCAGGATGAAGTTGCCATGTTAAAACTGGAAATGGACACAATAAAAAACCATAACCTGGAGAAGGAAAGGAAGTATCTTGAGGATATTAAGATTGCAAATGAGAAAAATGATAACCTTCAAAGGATGATAAAGCTGAATGAAGAAACGTTTACAAAAACAATATTCCAGTACAGTGGACAGCTTAACAATCTTAAAACTGAGAACGCGATGCTGAGTTCCAGGCTGGACAACGAGAAACAAAGCAAGGAGCGACTGGAGACTGACGTCGAGTCATTCCGGTCTAGACTGGCTTCTGCACTGCATGAGCACGCTGAAATCCAGACAGCAAAAAGAGACCTAGAAACTGCTTTCCAGAGAGCAAAAGATGAGTGGTTTCGTTTGAAGGACAAGATGAATTTTGATATGTCTAACCTCAGGGATAACAACGAGGTCCTCTCCCAACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'34-31,'34-30,35-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.652 C2=0.480
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149151=CCDC144C=WD(100=95.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGCAGCTTAGAAGGA
R:
ACTTCCTTTCCTTCTCCAGGT
Band lengths:
252-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]