DreEX0001025 @ danRer10
Exon Skipping
Gene
ENSDARG00000068460 | BX842701.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q7R5]
Coordinates
chr7:39193185-39198722:-
Coord C1 exon
chr7:39198677-39198722
Coord A exon
chr7:39196347-39196418
Coord C2 exon
chr7:39193185-39193264
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTGTAACAATCTCTCCAGGCG
3' ss Score
7.13
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
ATTGGGGGCACCATTGTGAGTTATATGGATGGGTGCTGCAAAACAT
Seq A exon
GCGCTGTGAACTCCCTGTTCCCCTTCTCTGTTAGCCCTTTGAAACCCACAGTTAACACAAACTGTGAACAAG
Seq C2 exon
GTAAAGAAGATGGGAAATCATGTCAAAAAGTGACAGTGAGGATGACCATTAGAAAGAACGACTGCCGTAGCAACAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068460_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000083804fB94
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCATTGTGAGTTATATGGA
R:
CGGCAGTCGTTCTTTCTAATGGT
Band lengths:
107-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]