DreEX0002232 @ danRer10
Exon Skipping
Gene
ENSDARG00000076357 | CABZ01102039.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F894]
Coordinates
chr12:20770-30700:-
Coord C1 exon
chr12:30610-30700
Coord A exon
chr12:23565-23621
Coord C2 exon
chr12:20770-20847
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTTTGGTGTCTCAGGTG
3' ss Score
8.84
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GAAAGATGTAGAATTAAACAACACCAGCAGCCGTCTGGAGGCCGAGGAGCTGCTGAATGTCGGCCTGCAGAAGAAAAGCAAAGAGCTGCAG
Seq A exon
GTGCGCATTGAGGAGCTGGAGGAGGAGCTGGAGGCGGAGAGAGGATTACGAGCAAAG
Seq C2 exon
GTGGAGAAGCAGCGAGCGGATCTCAGTCGTGAACTGGAGGATCTGACAGACCGACTAGAGGAAGCAGGAGGAGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076357-'4-5,'4-4,9-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.231
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF0157614=Myosin_tail_1=FE(2.1=100)
C2:
PF0157614=Myosin_tail_1=FE(2.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAACAACACCAGCAGCCGT
R:
GTCGGTCTGTCAGATCCTCCA
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]