DreEX0002301 @ danRer10
Exon Skipping
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6576091-6595894:-
Coord C1 exon
chr7:6595825-6595894
Coord A exon
chr7:6590537-6590655
Coord C2 exon
chr7:6576091-6576224
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTTTTGCTCAGGTG
3' ss Score
9.67
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GAAATGTGTGCGCGTCCTCAGTTTATCGTGGATGGAGCCACTCGCACAGACATCTGTCAGGGAGCGCTGG
Seq A exon
GTGATTGTTGGCTGCTGGCTGCTATCGCGTCCCTGACTCTGAATGATAATCTGCTGCATCGCGTGGTGCCGCACGGACAGGACTTTGACAGCAGATATGCAGGAATATTCCACTTCCAG
Seq C2 exon
TTCTGGCAGTTTGGTGAATGGGTGGACGTGGTGATCGACGACCGGCTGCCGACGAAGGATGGCAAACTGTTATTCGTGCACTCGGCGGAGGGTGGAGAGTTCTGGAGTGCTCTGCTGGAGAAGGCCTACGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199-'2-5,'2-2,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.7=100)
A:
PF0064816=Peptidase_C2=FE(13.0=100)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCGCGTCCTCAGTTTATC
R:
CGTAGGCCTTCTCCAGCAGAG
Band lengths:
194-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]