DreEX0003147 @ danRer10
Exon Skipping
Gene
ENSDARG00000104767 | CR381531.1
Description
NA
Coordinates
chr23:33942035-33951567:+
Coord C1 exon
chr23:33942035-33942139
Coord A exon
chr23:33946600-33946691
Coord C2 exon
chr23:33951520-33951567
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTTCTCTTTCTTCAGGCT
3' ss Score
11
5' ss Seq
AATGTATGA
5' ss Score
2.55
Exon sequences
Seq C1 exon
GAGGAGCCGCTGTTCACGGCAGATGGTTCCCTGTTTTACCTCATCCTGCCTGCCAAGCAAGGGGCCCGTGGGGAGTTTCTCCACATCGCCAGCCTCCCCGCTCAG
Seq A exon
GCTTCCTCTCCTTCAGTTTCTCCTCGCTTTCTAACATCAGGGAACTGGGATGTAATCTCACTGTGCGCCCTTGATGAGGAGAACGATAAAAT
Seq C2 exon
CTATTTTCTGAGCGCGGAGGAGTCGCAGCAGAGCAGACACTTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104767_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.3=100)
A:
PF0093016=DPPIV_N=FE(12.7=100)
C2:
PF0093016=DPPIV_N=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCCGCTGTTCACG
R:
TGTATAAGTGTCTGCTCTGCTGC
Band lengths:
152-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]