DreINT0007677 @ danRer10
Intron Retention
Gene
ENSDARG00000104767 | CR381531.1
Description
NA
Coordinates
chr23:33946600-33951567:+
Coord C1 exon
chr23:33946600-33946691
Coord A exon
chr23:33946692-33951519
Coord C2 exon
chr23:33951520-33951567
Length
4828 bp
Sequences
Splice sites
5' ss Seq
AATGTATGA
5' ss Score
2.55
3' ss Seq
AATGTGTCTTTCCCCCGTAGCTA
3' ss Score
10.03
Exon sequences
Seq C1 exon
GCTTCCTCTCCTTCAGTTTCTCCTCGCTTTCTAACATCAGGGAACTGGGATGTAATCTCACTGTGCGCCCTTGATGAGGAGAACGATAAAAT
Seq A exon
GTATGACAGCTTGAATTTACTGGCTAACCATTTGACTTGAAGTCTGTGTAGTAAAGCATCTCATAGTCAACTCAACTACCTACCATGAGTAATTATTGAATTATTTACGCCAAGCGATCCCATTTAGCCCAGTGAATCAGCATAGATGGCACTTAATTAAAATTAATACAGCAATTTAATGTTGAATCGGCTGTAATGACTCTGTCAGTTTCTCTCTGGCTTTGTTCTCTAATTGCTACCGCATAAAGCAAACTCTTGAATAAACCATCCCAGAAATAATCGCTTTTTCTGATTTAACACTTGAACTACTAATTTTGTTTTTCTTTAGTCATTTAAAGGGATAGCTCACCCAAAAATGTAAATTTTGTCATTATTTAGGCATCATTTTTGTTGTTTTATTTTTGTTGTTTCAAAACACAGAAGAGTTTTTTTTTTCTTCTGTTGAACACAAAAGGAGATGCTTTGAAAAATGTTAAAAACCTGTAACTATTGACTTTCATAATATTTGTGTTTACTATTATGGAAGTGAGTGGTTACAGCATATTTCAAAATATCTTTGTAGCGAGTGGGCGGGGCTGAGAGCCGTGAGTACGAGATGAGGCTGGTGCTTGAGTGATAATGTGAAGCACCTGTGTCGTGCACAGGCCTCGAGTCCCAAGGAGGAGTTCTGGATTATAAAAAGAGGAGACACCGCAGTAGAAGATGAGAGAGGACCAGGCCTGGACACTTTGTTTTACTTTTGCTTCAGTTTGTTTTATTTTTTCATTATTAAAATCATTTAAAAGTCAAACTTTTAAATGATTTTAATTATGACAAAAATAAAACAGACTGAAAACTGAAAACAAAAGCTGAAAGCAAAAATAAAACAAAGTGTCCAGGCCTGGTCCTTTCTTGTCTTCCACTGCTGTCTCTCCTCTTGTAATCCAGAGCACCTCTGTGGGACTCATCCCATTCCCACGCCCCTGCCCACTCGCTACAATCTTTTTTTGTGTTGAACAGAATAAAGAAACTCCTTAAAGGTTTGAAACCACTTGAGGGCTAACAAAAAGTGAGTAAATTTTCATTTAAATTTTCATCAAACTATCAATTTAACAACTTGCTTAGAATCAATCCCATATAACTATAGTACCATGACCATTCCAAAATGCGTGATTATTTAAACATTTTTTTTTTTATTAAAATTTCAAATTTTTACAAAAGAGTTGAGCAGTTGAATGACCATAACGATCAAATTGACCACAAGTATTTCAGTGTCTGCTACTTTTTCCTGTGGCTTTGAATATACATGCCTATGTTGCCTAGATACTTTCTGATATCTTTCTGATAACAAGAACATCCCTTTTTGATGCCAAATAGTCCAGTAACTCAAACACAATTATAGAGAATGGAAATCTACGTCATAGTGAGTTGCGTTCTGCCGTGATTTCAGACACCCTGAGAAGAGCACAATGTAAATCAATGCAAATCACCACAGAAACAGACTCTTTTATAGTAATGGACCCTTTTCACAAGGCGCGTTTTGCATTTAACAGTAATCATAATCTTAAATCCCTTAAATTCTTATTTTAATGAAAAGGTATGAACATTTGTATGCATTTATGAATGTATTATATCATCTTTGCGTCAAATTACAAAAACAACTTACCACTTATGCGAGCTGTTTCTAATGCAGCATCTGTGTGGCTGAGAGTAAAATTGACGTTATTTTCTCCTCTTGCTGTCGCTGTCAGTTTCACACAATTTTTCCCCTTTTTCTGTAAGTCTTGATAACACCATCATGAGTTTTTCCTTAATTATTTCAGCAAATATTTGTTGTACTCTCCGATTCACTGCTCTCTAAGTTTAACCAACCATGATGCTACTGAGAAACCAGGAAATGTGAAAAGGGTCTTGTAGACAAACATAGAACAAACACTCTTTGTGTGTTTGAGAAGCTAAAAAAATATTCATTCCATAATGTTCAATCAATCTCCTGCGCTAAAGTGAAATTAGAGAAGCCAGGCACAGATTTAGAGGGAGCCGATGAAATAAATGAACCAGCTTATCTGTAGGTGACAGAGTATAAAAGAGCTGCTGCAAGAAAATATTCCCACATATGATTTTCTTCGTTTGTGATGTGAGTGTTTATAGTTTATTGCGGATCAGTGTATACTCAAATAATGTTTTTGCTATTTGTTCAAAATACTTATTTAAAATGAGCAGAAACACAATTCTTGAGGTTTTTTGGGGGGATAAATGAATTGTTTTATGTTTAATCAGCCTAAAATTGAAAAACTAATCGATTTGCATTGGGATGACATGAAGAGATTGTGTGGAACCCTGCTTTTTTACAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACAGTTGAAGTCAGAATTATTAGCCCCCTTTGAATTTTTTTTTTTTTTGTTTTGTTTTCAAAATATTTAGCAAATTATGTTTAACAGAGCAAAGACAATTTTCACAGTATGCCTGATAATATTTTTTCTTCTTTTTTGTTTTATTTCGGCTAGAATAATAGGAGTTTTAAATTTTTTATCAACCATTTTAAGGTCAAAATTATTAGCCCCCTTAAGCAATTTTTTTGACTGTCTACAGAACAAACCATCATTATACAATAACTTGCCTAATTACCCTAACCTGCCTAATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGTCAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATATGTTATTAGACATGAGTTATTAAAACTATTATGTTTAGAAATGTGTTGAAAAAAAAATCTCTCTGTTAAACAGAAATCGGGAAAAAAATATATACAGGGGGGTTAATAATTCTGACTTCAACTGTAAATGATACAATAGAGATCAATAGGATCTAGGTTCCCATGTCCCAAATTTCCATAATGCAATGTGCTGATGACACATTCCCATTCTCTATAACCCCGTGGGCATCCTTGATGTCAAAATGAATTCAAATCAACATCAAAAAACATGTCAAAAAGCTAATTGGTTTGACGTCAAAACCTTCACACATTGACTCCCTTTTGACCACCAAAATAGCGACACGTTACATATTACAATATAAGAAATGCTTTATTCATATGAAATTTTCCAAATGACCAATTTACTCTGGGTTTTGTGTCTAATGCATATAAACTAGCTGGATGTTAAAATGACATCAAATAGACATCTAACATTGGAGTCAAAAACAGTCCTGTAATGGATATTTGACATGTTTTAACCAGTTTTACATGGAATTTTGAGATCAAGGTACACAGCAAACAATTTTGTGGACATCTATTAGACATCTAAACATGGACAGTTTGGCTAAAACAAGGCTAAACTGTCAGTGAAAATATAAAAGATGTCTAAGAATAACCCAAAACTGGATTAGTCGTCAAATAGACAGATTAGACAGAATTTATATGTGAAGTCATCCATTTCTGTTTATTTGATGACTAGTCTATTTTTTGCCTATTCTTAGACGTCTATTAGATTTTCACTGACAGCCCAAATTTAGCCTTGTTTTAGCCAAGATGATTATTTAGACGCCTATTAGACATCTTTTAAAACAAAAATGCTTGCTGGATGGTCAGTTTACATCAAATCAAATCAAATTAGCTTTTTTACATGTTTTGTGATGTATTTTGACAAAGTTTCTTGCTGGATGGATATAATACAAAAATATTAACTTTTATGGCGCTGACTTCATAAAATATAACAACAGACTTTCAAAGAGCAATGCTAAAAACTGAATAGAAGCTTCAAATGTAAATAAAATGTTACAAAAATCTAATTCAGTCCAGTTTAATATGGAAGGTCAGAATGACTGTTATATTCACAGGATTAGTTCCACTGTCAAACAAAACTTGTACAAGCGTATTTCTAAATGGTCAGTTCTGTTGCTCAACACAACATTTAGACCCACAAATCAATGGCTTACAATTAATTCGCTCCTGACAGAAATGAATTCTAGTCACAGGCTTTCCACTGCATGTGTAGTCATTTATTTCTGTTTATTTGATGAGTAGTCCAGTTTTGGCCTATTCCTAGACGTCAATTAGATTTTCACTGACAGCCCAAATTTAGCCTTGTTTTAGCCAAGATGACTATGTTTAGACGTCTATTAGACATCTTTTAAAAAACAAAAAGTGATTGCTGTGTAGTCAGTATACATCAAATCAAATCAAATTAGCTTTTTGACATGTTTTGTGATGCATTTTGACAAAGTTTCTTGCTGGATGGATATAATACAAAAAATGTTATATTTTTAGGGTGCTGACTTCATAAAATATGACAACAGACATTCAAAGCTTAATACTAAATACTGAATAGAAGCTTCAAATGTAAATAAGATGTTAGAAAAATCTAATTCAGTCCATTTTAATATGAATGGTCAGAATGATTGCTATACTTACATGATTCTGGTAGTTCCATTGTCAAAAAAAACAAAAAAAAACTTGTACATGCGTATTTCTAAATGGCCAGATCTGTTGCTCAACACAACATTTAGACCCACAAATCAATGGCTTACAATTAATTCACTCCTTACAGAAATGAATTCTAGTCACAGGCTTCCCTACTTTGCATGTGTAGCGTAAGATGCAAACCTGCTTAGTATGCAGCTGTACAAAGCTAGTATGTGGAGGTAGACTCTATTATTAGAGGATAAATGACTGACTACAAATAGTAACTCAAAATCCTTTTCAGGTTTCCTTAATGTGTCTTTCCCCCGTAG
Seq C2 exon
CTATTTTCTGAGCGCGGAGGAGTCGCAGCAGAGCAGACACTTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104767:ENSDART00000159642:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(12.7=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]