DreEX0003183 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13458086-13463830:+
Coord C1 exon
chr1:13458086-13458158
Coord A exon
chr1:13458503-13461397
Coord C2 exon
chr1:13463747-13463830
Length
2895 bp
Sequences
Splice sites
3' ss Seq
CCTCATAATTTATCCCATAGGTT
3' ss Score
9.38
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGACAGCTTTACTAATCCATGGATGTTTCATGAGATCAAGACAGAATCCGCAAAGGAAGTAGCAGATGAAGAA
Seq A exon
GTTTCAACAGCATCTGAGGAGGAAAATCAGGCTCAGTTTGACCTTTCAGACCATAAAAATGCTTGTCTCCCTTCATCACAAGTCAGTTCGAAAAGTCAGTCCGAGGACCACCAACAATCATCAAAGACATCTCAAAATGTCTTTGATTTCAGCCAGGTATCTATTGCAAGATTTTCATCCAGTGAAAACTCAGTTTTGTCAACAGCTGAACCTGGACAAGCAGTACCTGACCTACTGCAACATACTTCACCAGTGACACTAGAGGAAGAAACACAGCTCCAAGAACCAATGTATCAAGATGAAAGTTCTGCTTGTGCTGATCAAGTGTCACCTGTGTATGAAAAAAGCGATTTAGAAAGCAGTGAAAAATCATTAGATGCACAACTCTTTAAATCAAATGGATCTTCAGACACTATGCAGTCCCTTTCATGGCGCGAAAACAAACCATCTGAAGCTGATGAACTGACTCCTGAGAACAACCAAATAAGCCAAAATATTAGTCCATCAATTTCCCCTGGTGCAGTTGTAAGGGAGGCTGATGAAATTCTCTCACGCAGCGATGAAGTAAATCCAGTGGTTTCAAGTGTGACTCCTGACCTCATTAAGGGCTCTCCAGAATCAGATCAGGTATTTTTTACTCCTGATAAGTTTAGTGATATGAATCCAGTGCCATCAATGCAAAGCCACATAGCAGTAGAACAAAGTTTTGTTCAGTCCTGTTCTGAGGTTGACTCAGCATCACTGGAGTCACCTATCTATAATGACAACACAGTTTTAATTCAAGAACAATCGGATACCAACACCTATTCACAAGAACTTTCAGAGCCTGATGTTGATACTAGGAAAGAACAGCAAACTCTTGCTCATGAACAGGAGCTATATCTGCAAAAAACAGAAGCCTTAGGAGACCATTGTAATGACACTGAAGATAGAAATTGTCCTGGTAAAGCAGAACCACAATTGGATTCAACCACTGATCCTTTTATAGATGACTCTCAGGATTTTAGGAATGAACTGTTATCCCAATCTGAAACTGACCCAGACACATGGATCGAAAGAGGAACTGCACAGCTGAGGCAAACATCTCCTTTCCGCTCTGACCTCAGTCAACAACCAGAAGCCTGTATGCCTTGTCAACATTTTGACATCAGGGAAAAGTCTTTAGAACTTGAAACAGAAAGCAATAAGCAATCAGTTTCACATGAAATAATGACAGCCAGAGGATTAAAACGACCACAGTCTGAATCATTACTCTCTAGTGCAAGCCAGCAAATAGAAAAAAAGCATACTGAACGCTGTCTCTCTGAGTCGTCTGAACCCTTGGTACTCACTCTAAAGATTAATTTAGCACTTGAGAAAGCGGTTTCACAAGAGGAAATACTAGCTTTACCGCTGTCTCAGGATGGCAGTGACAAGGCTTTACCTCCCAAAGAGTTTAAACGTCAACTCTCAGACTCAGTTTCGTCTCGCGCAAAATCACAGGAAAAACATTCTGCCCGTTGTCTCTCTGGTTCTTCTGAAACGTTGATGCTTGATGAACTTAAGAAAACATTTCAACCAGAACAGCCATTATCTGATCATACAGTCAACTCAGAGGTGAGTGTTTCAAAACTCACTGCAGAATCCCAAGAAACATTCACAGGGGAACAGCAATCAGTGATTGAAGAAACATTAGTGGAGTCACCTAAATCTCAGATTGATCTGAGTGAACATGCACAGTTTTTCCAATCTGAGACTGGCCCAGACATGTGGATTCAAAGGGAAACTGCACAGATGAGTGAAACTTCTTCTTTGTGTAGCTCTGACCTCAGTCCACAAACACCAGAAACAGTCATAAACTGTCAACATTTCAGGGAGAAGTCTTCTGAACTTGAATCAACGAGTGCTATAAAGTCTGCTTCCAAGGGGGCAGTTGAAGCCAAAGGTTTAAGACGACCTCAGTCTGAATCGTTCATCTCTGGAGCAACCCAACAGTCAGAAGAAAAGCGTACAGACCGCTGTTTCTCTGAGTCCTCTCAACCCTTGGTACTCACACTGAACATAGATCCGGCACTTGAGAAAGTTGTTTCCCAGGAGGCCATACTTGCTTTGCCACTGTCCCAAGATGGCAACACCTTACCTTACCTAAAAGATTCCGAACGACTACTGTCAGACTCAGTTATGCATGGTTCAATATCCCAAAAAAAGGAGGGAAATAATTCTGGACCTTGTCTTACTGACTCTTCTGAGGACTTAGTTTTCAACATGAGTTCATCACCTGAGAAAATTAAGAAACCAGTTCAACCAAAACAACCAACATCTGATCAAACAGTCAACAACGAGGTGAGTGTTTTATCAGTTACTGCATCAACCCAAGACACATTTATTGGGGAACAACAATCTGCAGTTAAAGAAACATCACTGGACTCACCTAAATTCCAGACTGATCTGAGTGAAAATTATGAATTAAAAGCCAGTGAGATGCCAAAAGCTGACAAACCAAAGCTTGTTGGTGTAATAAGCACTGATCAACAACATGAAGACTCAGATCTTGAGAGTTTTTTTGATTGCAAACAGACCATCTCAGATTATTCTGAAGCAGAAGATGATGAACATTGGAAAGGCACAATGACACTTAATGATCAATTCTTGACATCAACCATTCATGAGCTACAACAAAACACGAATGTCAGAAGTCCTTCAAGCCTTGTAGCACCCGACGAGAGCCCTCGTTGGTCAGTCCAGTCATCAGATAGCGAAGATTTTGAGGACTCTCAGATCATCCATGAGCCCAGCGATGAGGGTGAAGTGAGAGACTTTTCAAGCAAGGCTAGTCTCAAAACTTCTGCACAAACTCCTCAAGAGCTTCCTCCTAGAGGAGGGGCTGAGTATAATGATGATGATGATCTAAGGAGG
Seq C2 exon
GGTGATGATGTTCCAGATATTTCTCCACAGTCAGTAACAGAAGAGCAATACACAGATGCTCAAGGCAACTTGGTTGTAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026_MULTIEX2-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.837 C2=0.786
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]