DreEX0003184 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13458086-13463830:+
Coord C1 exon
chr1:13458086-13458158
Coord A exon
chr1:13463169-13463258
Coord C2 exon
chr1:13463747-13463830
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGTTAAATCTCCTGGTCAGGAG
3' ss Score
4.46
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GGACAGCTTTACTAATCCATGGATGTTTCATGAGATCAAGACAGAATCCGCAAAGGAAGTAGCAGATGAAGAA
Seq A exon
GAGATTGAGGATGCATTAGGTGTGCTGTCGGATAGCTCTGATGAGGATGTGCTGACCACCAGAATAGTGCGAAGGAGAGTAATTATTCAG
Seq C2 exon
GGTGATGATGTTCCAGATATTTCTCCACAGTCAGTAACAGAAGAGCAATACACAGATGCTCAAGGCAACTTGGTTGTAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.400 C2=0.786
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCTTTACTAATCCATGGA
R:
TCTTTACAACCAAGTTGCCTTG
Band lengths:
155-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]