BtaEX6030004 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13390359-13393519:-
Coord C1 exon
chr6:13393391-13393519
Coord A exon
chr6:13390932-13391024
Coord C2 exon
chr6:13390359-13390442
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCATGCTTCCACCAGGAG
3' ss Score
7.4
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GAACCTGAGGAGCCCCCCGAACGCAGGGAGGAGAGTTCACCTCGGAAAACCAGCCTCGTGATCGTGGAATCGGCTGAGGACCAGCCTCAGGCCTTCGAGAGGCTTGATGAAGAGGCTGCTTTTCAAAAG
Seq A exon
GAGCTAACAGAGGAATTAGGTGAGCTGGAGGCCAGCTCAGATGAGGAGGCGATGGTAACAACCAGGGTTGTCCGCCGACGATTGATTATTCAG
Seq C2 exon
GGAGATGATATGCCTGACATACCCCCAGAAACAGTCACAGAAGAAGAATACATCGATGAGCATGGACACACCGTGGTAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392-'125-131,'125-130,129-131=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=0.194 C2=0.464
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCACCTCGGAAAACCAGC
R:
TTTACCACGGTGTGTCCATGC
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]