DreEX0013095 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57598232-57610982:-
Coord C1 exon
chr7:57610910-57610982
Coord A exon
chr7:57598502-57598591
Coord C2 exon
chr7:57598232-57598315
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGCATCTTTGCTACTCTCAGGAA
3' ss Score
6.58
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGTGGTTGGAGACTCTACACACAGTTTTGAAATGGTTGGACTGAGGCAACAATTTCCAGGCACTATCAAGCAA
Seq A exon
GAAATAGCTGAGGAGCTAGGTTTGCTGTCTGATAGTTCAGAGGAAGAGGTGTTGACCACCAGGGTGGTGCGGCGCAGAGTTGTAATTCAG
Seq C2 exon
GGTGACGACATGCCTGAAATTCCTCCTCAGACAGTGACAGAAGAGCAATACACTGACGAATATGGAAACATGGTGGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.419 C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTTGGAGACTCTACACAC
R:
TGACCACCATGTTTCCATATTCGT
Band lengths:
152-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]