RnoEX0009350 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231233203-231236763:-
Coord C1 exon
chr2:231236475-231236763
Coord A exon
chr2:231233785-231233877
Coord C2 exon
chr2:231233203-231233286
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCTTACATGCTTCCACCAGGAG
3' ss Score
7.23
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
TGTGACCACACCAGGGGCAGAAGTAGAAGACACTCAGAAGGCCACAGTCATTCCTGACTCTCTTTGTAAGACTCCTGAGGACATCAGCACCCCTCCTGAGGAAGCAAAGCCTTGTCTCCAGACTCCAGTGGCTATCGAACATGCTTCTCCAATTGTCCAAGAACCTGAGGAGGCTTCTGAGCCCAAAGAGGAAAGTTCTCCAAGGAAAACCAGCCTGGTCATAGTGGAGTCAACAGACGACCAGCCTCAGGTCTTTGAAAAATTGGATGGTGACGCTGCTTTTCAAAAG
Seq A exon
GAGCTAACAGAGGAATTAGGGGAGCTGGAGGCCAGCTCTGATGAGGAGGCCATGGTAACTACCAGGGTGGTCCGACGGAGAGTGATCATTCAG
Seq C2 exon
GGAGACGATATGCCTGACATTCCCCCAGAGACAGTCACAGAGGAAGAATACGTCGACGAGAACGGGCACACTGTGGTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.935 C2=0.835
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000080637fB1060
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGAACCTGAGGAGGCTT
R:
CTGTGACTGTCTCTGGGGGAA
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]