DreEX0013094 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57598232-57610982:-
Coord C1 exon
chr7:57610910-57610982
Coord A exon
chr7:57601354-57601430
Coord C2 exon
chr7:57598232-57598315
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTATGATTATTTAGGTG
3' ss Score
9.41
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGTGGTTGGAGACTCTACACACAGTTTTGAAATGGTTGGACTGAGGCAACAATTTCCAGGCACTATCAAGCAA
Seq A exon
GTGAGCGTCCCTTTGCTGAAGAGTTACCTCCAATGGAGGAAGTACAGTATGATGACGATGATGACTCTCTAGGGAGG
Seq C2 exon
GGTGACGACATGCCTGAAATTCCTCCTCAGACAGTGACAGAAGAGCAATACACTGACGAATATGGAAACATGGTGGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.388 C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000147287fB1177
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTTGGAGACTCTACACAC
R:
TGACCACCATGTTTCCATATTCGT
Band lengths:
152-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]