DreEX0003456 @ danRer10
Exon Skipping
Gene
ENSDARG00000100088 | CU915738.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9GXL1]
Coordinates
chr15:37162666-37170678:-
Coord C1 exon
chr15:37170515-37170678
Coord A exon
chr15:37165243-37165313
Coord C2 exon
chr15:37162666-37162838
Length
71 bp
Sequences
Splice sites
3' ss Seq
GTATTTTATTTCTTTTTCAGATG
3' ss Score
11.43
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TTAGAACCAAAGAACTTGAAGATCAGTCCACCATTGAGAAACACAGCTCATCAACACTGGTTTACAGCGGACAGATAAGACTTCTCAAACCAGAGTTCAACCCAGCATACGAGAACCCAGAGACTCCACAATTCCAACAAGCAGCGAAAGACTTGGAAACAATT
Seq A exon
ATGAACGACACATTTACCAGAGATCCTATACTTTCCAAATACTACACCAAGTCTGTGATCACCGCCTTCAG
Seq C2 exon
TGAAGGAACCATCGCGTATCATTGGTCTCAGTTTGATGTTCCTGAGATGGACCAGGAGATGGTCCCACAGGTGTCAGAGGAGCGCGTTGTCGAGGCTCTTCGGAGGAGCATCCGGCAGGAGGGCAGACGTGAAGGGAAAGTTGCAGTAACTGCCACCGACATCACTGCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100088-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.000 C2=0.576
Domain overlap (PFAM):
C1:
PF074666=DUF1517=PD(34.1=54.5),PF066827=DUF1183=PD(48.6=96.4),PF148281=Amnionless=PD(48.6=96.4),PF139081=Shisa=PD(49.5=94.5),PF033028=VSP=PD(7.7=7.3),PF151451=DUF4577=PD(26.2=30.9),PF086935=SKG6=PD(10.3=7.3),PF109073=DUF2749=PD(51.0=47.3),PF0139015=SEA=PU(95.0=69.1)
A:
PF0139015=SEA=FE(21.5=100)
C2:
PF0139015=SEA=PD(41.1=74.6)
Main Skipping Isoform:
ENSDART00000165867fB322
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAATTCCAACAAGCAGCG
R:
AACTTTCCCTTCACGTCTGCC
Band lengths:
181-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]