DreEX6077846 @ danRer10
Exon Skipping
Gene
ENSDARG00000100088 | CU915738.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9GXL1]
Coordinates
chr15:37165243-37171198:-
Coord C1 exon
chr15:37171051-37171198
Coord A exon
chr15:37170515-37170678
Coord C2 exon
chr15:37165243-37165313
Length
164 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTTTCATTTCCAGTTA
3' ss Score
9.52
5' ss Seq
ATTGTGAGC
5' ss Score
3.78
Exon sequences
Seq C1 exon
GAGGGTAATGGAGGCCCCGAGCAGGTGACATTCCTGGGGAGTAATCAGAAGAAAGCATCAAATCGAAAGACTGGTATTGCCATCGGGGTTATCATTGCCCTGCTAGTAGTCGCTGCGGTGGTCGGATTTCTTGTGTGGCTCTTTGTTG
Seq A exon
TTAGAACCAAAGAACTTGAAGATCAGTCCACCATTGAGAAACACAGCTCATCAACACTGGTTTACAGCGGACAGATAAGACTTCTCAAACCAGAGTTCAACCCAGCATACGAGAACCCAGAGACTCCACAATTCCAACAAGCAGCGAAAGACTTGGAAACAATT
Seq C2 exon
ATGAACGACACATTTACCAGAGATCCTATACTTTCCAAATACTACACCAAGTCTGTGATCACCGCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100088-'2-3,'2-1,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.145 C2=0.000
Domain overlap (PFAM):
C1:
PF074666=DUF1517=FE(55.7=100),PF066827=DUF1183=FE(45.0=100),PF148281=Amnionless=FE(45.0=100),PF139081=Shisa=FE(46.7=100),PF033028=VSP=PU(90.4=94.0),PF151451=DUF4577=PU(72.3=94.0),PF086935=SKG6=PU(87.2=68.0),PF109073=DUF2749=PU(47.1=48.0)
A:
PF074666=DUF1517=PD(34.1=54.5),PF066827=DUF1183=PD(48.6=96.4),PF148281=Amnionless=PD(48.6=96.4),PF139081=Shisa=PD(49.5=94.5),PF033028=VSP=PD(7.7=7.3),PF151451=DUF4577=PD(26.2=30.9),PF086935=SKG6=PD(10.3=7.3),PF109073=DUF2749=PD(51.0=47.3),PF0139015=SEA=PU(95.0=69.1)
C2:
PF0139015=SEA=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGTAATGGAGGCCCCG
R:
CTGAAGGCGGTGATCACAGAC
Band lengths:
219-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]