DreEX0004368 @ danRer10
Exon Skipping
Gene
ENSDARG00000005846 | FO704755.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q751]
Coordinates
chr6:3570087-3649370:+
Coord C1 exon
chr6:3570087-3570165
Coord A exon
chr6:3576693-3576819
Coord C2 exon
chr6:3649133-3649370
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTCCCTCCCTCAGGCT
3' ss Score
11.06
5' ss Seq
TTGGTATGG
5' ss Score
5.53
Exon sequences
Seq C1 exon
AGCAGGAGGAGTGATGGATCCACTCTACAGTCCAACACTCCAACATGAAGATGCTCCACTGCAGATCTCTCATGCTAAA
Seq A exon
GCTCTCTTGACACCGCAATGACAAGATGATTAATTCCTATTTTTAGTCGTGTCCAGAAACCCCAAATGGCTTTTCTCCATAAGTCAGGCTGTGACGTTTCATGCAGATCTTCAGTGATGTTCGTTTG
Seq C2 exon
AGCTGCAAACACTCGACGGATTTGAGCTGTTCGTTCTGCTTTGATGATTGGACAGCGGTAATCTTCAAAGGCACAACTCTTCATTCTGACTGGCTGGAGTTCTGATCAAACTCCCGTGTGTTCACTTTACTCCAACATTCTCCCGCGATTCAAGAGGCGCAAGTTACCTCTCTTTTGGGAACTAAAGGATCGACAGACCCTCATAATGCACCATGACCCACTGCAGGCTTTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005846_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.250
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCACTGCAGATCTCTCA
R:
GCAGTGGGTCATGGTGCATTA
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]