DreEX0004369 @ danRer10
Exon Skipping
Gene
ENSDARG00000005846 | FO704755.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q751]
Coordinates
chr6:3570087-3652278:+
Coord C1 exon
chr6:3570087-3570165
Coord A exon
chr6:3649133-3649370
Coord C2 exon
chr6:3651451-3652278
Length
238 bp
Sequences
Splice sites
3' ss Seq
CCAGTTCTTTTATGATCCAGAGC
3' ss Score
5.33
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
AGCAGGAGGAGTGATGGATCCACTCTACAGTCCAACACTCCAACATGAAGATGCTCCACTGCAGATCTCTCATGCTAAA
Seq A exon
AGCTGCAAACACTCGACGGATTTGAGCTGTTCGTTCTGCTTTGATGATTGGACAGCGGTAATCTTCAAAGGCACAACTCTTCATTCTGACTGGCTGGAGTTCTGATCAAACTCCCGTGTGTTCACTTTACTCCAACATTCTCCCGCGATTCAAGAGGCGCAAGTTACCTCTCTTTTGGGAACTAAAGGATCGACAGACCCTCATAATGCACCATGACCCACTGCAGGCTTTCCTTCAG
Seq C2 exon
GATCGAACATCAAGCTCAACTCCAGAATCCATCAAATCATCTCCCTTGATGTTGCTGGAAGACACCTGTAATCGCATTGGCCGTGCATCCCAATCCATGGAGTCCTACATCCCATATGCTTCCCCAAATAAACTCTTCCATCCCTGGAGAAGTACTGACTCCACTCATCTATCCCAATCAACCTTCTCTATTCCTCCTTTACACCAGGACATGCCACTGACCGAACACTTTGACTGTTCACCCCTGAAGATGTTGCCTTGCCCATCCTCATGTATTTCAACCTGCGTACCCACACACACCGGACTCGTGCACGCGCAGAGACATTTGGCACGGGATGACATCCAATGGTGGAGCTCCGCCAATCACTCCTCGGCGCATTTTCAGCTCACACGTGGGTGGATTTTGGGTCAGCCAGAGTTTGGCCACTATCAGTCCCAAATCCTGCTGAACTCAAAGTCACGACAAAGCCGGAGATGCATGTGTCCTAATTGCCAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005846_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.250 C2=0.065
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGAGGAGTGATGGATCC
R:
TCAGTGGCATGTCCTGGTGTA
Band lengths:
299-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]