DreEX0004938 @ danRer10
Exon Skipping
Gene
ENSDARG00000000887 | GTSF1 (1 of 2)
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
Coordinates
chr23:32174671-32175428:+
Coord C1 exon
chr23:32174671-32174787
Coord A exon
chr23:32175040-32175180
Coord C2 exon
chr23:32175310-32175428
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTTGGCGGACTTTATTTAGGGT
3' ss Score
5.28
5' ss Seq
ACGGTAATC
5' ss Score
4.8
Exon sequences
Seq C1 exon
ATGAAACACGTGACATTCCACAGCAGCACACAGCACTTGATTGATGATCTGCATTGATTGCAGTCAGCAGATGGGAAGGCCAGCACGCGACTGCTTCAACAATACAAAAGACTAGCA
Seq A exon
GGTGAAGATTTTTTTAAACCCACGGAAAGGTACACGGGGGTCCAGGAAACGGAAGTATGGCCACTTATAGGTTTGGCAGTAGCGTCGGTCCGTCTGGAGTCCACTCTGAAAGTACAGGGCAGATGTGGAATGAAGACAACG
Seq C2 exon
GTTATGGTGAAGAAACGGAAGATGCCAGCGACCCTAATAGGATTGTGCAGTGCCCATATGACAAAAACCACCAGATCAGAGCCTCACGCTTCCCTTTTCATGTTCTCAAGTGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000887-'0-4,'0-1,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.655 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF052537=zf-U11-48K=WD(100=67.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACGTGACATTCCACAGC
R:
CTTTCTGCACTTGAGAACATGAA
Band lengths:
234-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]