DreEX0004939 @ danRer10
Exon Skipping
Gene
ENSDARG00000000887 | GTSF1 (1 of 2)
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
Coordinates
chr23:32175040-32178913:+
Coord C1 exon
chr23:32175040-32175180
Coord A exon
chr23:32175310-32175428
Coord C2 exon
chr23:32178787-32178913
Length
119 bp
Sequences
Splice sites
3' ss Seq
GGCGCCTCCTGTTTCCGCAGGTT
3' ss Score
10.2
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGTGAAGATTTTTTTAAACCCACGGAAAGGTACACGGGGGTCCAGGAAACGGAAGTATGGCCACTTATAGGTTTGGCAGTAGCGTCGGTCCGTCTGGAGTCCACTCTGAAAGTACAGGGCAGATGTGGAATGAAGACAACG
Seq A exon
GTTATGGTGAAGAAACGGAAGATGCCAGCGACCCTAATAGGATTGTGCAGTGCCCATATGACAAAAACCACCAGATCAGAGCCTCACGCTTCCCTTTTCATGTTCTCAAGTGCAGAAAG
Seq C2 exon
AACCACCCCAAACTGGCCAGTGAACTGAAGACCTGCCCCTTTAATGCCAGACACTTGATTCCCAAGCATGAGATGTCTCATCACATAGCAAACTGCGAAGACAAGAGGTGTTTGAACGCTGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000887-'2-8,'2-4,3-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=0.500 C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
PF052537=zf-U11-48K=WD(100=67.5)
C2:
PF052537=zf-U11-48K=WD(100=62.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCACGGAAAGGTACACG
R:
TCAGCGTTCAAACACCTCTTGT
Band lengths:
248-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]