HsaEX0029063 @ hg19
Exon Skipping
Gene
ENSG00000170627 | GTSF1
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:26565]
Coordinates
chr12:54856955-54865061:-
Coord C1 exon
chr12:54865017-54865061
Coord A exon
chr12:54858851-54858951
Coord C2 exon
chr12:54856955-54857081
Length
101 bp
Sequences
Splice sites
3' ss Seq
GAAACACTTCTGTCTTTCAGCCG
3' ss Score
6.36
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CACTTGGATTCAGCTTCTTCATTTCCAACATGGAAGAAACTTACA
Seq A exon
CCGACTCCCTGGACCCTGAGAAGCTATTGCAATGCCCCTATGACAAAAACCATCAAATCAGGGCTTGCAGGTTTCCTTATCATCTTATCAAGTGCAGAAAG
Seq C2 exon
AATCATCCTGATGTTGCAAGCAAATTGGCTACTTGTCCCTTCAATGCTCGCCACCAGGTTCCTCGAGCTGAAATTAGTCATCATATCTCAAGCTGTGATGACAGAAGTTGTATTGAGCAAGATGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170627_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.029 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
PF052537=zf-U11-48K=WD(100=79.4)
C2:
PF052537=zf-U11-48K=WD(100=62.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTGGATTCAGCTTCTTCATTTCC
R:
ACATCTTGCTCAATACAACTTCTGT
Band lengths:
170-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)