RnoEX0040610 @ rn6
Exon Skipping
Gene
ENSRNOG00000036831 | Gtsf1
Description
gametocyte specific factor 1 [Source:RGD Symbol;Acc:1310791]
Coordinates
chr7:145038456-145047114:-
Coord C1 exon
chr7:145047070-145047114
Coord A exon
chr7:145044301-145044401
Coord C2 exon
chr7:145038456-145038582
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTTCTCTTTTCAGTCG
3' ss Score
9.49
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CACTTGAACAGGACTCCTTTGCCATCAGCATGGAAGACACTTACA
Seq A exon
TCGACTCCCTGGACCCTGAAAAGTTACTACAGTGCCCCTATGATAAAAACCACCAGATCAGGGCCTGCAGGTTTCCTTATCATCTTATCAAGTGCAGAAAG
Seq C2 exon
AATCATCCTGATGTCGCAAACAAATTGGCTACTTGTCCCTTCAATGCTCGGCACCAGGTTCCCCGGGCTGAGATCAGTCATCACATCTCGAGCTGTGATGACAAGAGCTGTATTGAGCAGGATGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036831_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
PF052537=zf-U11-48K=WD(100=79.4)
C2:
PF052537=zf-U11-48K=WD(100=62.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAACAGGACTCCTTTGCC
R:
CCACATCCTGCTCAATACAGCT
Band lengths:
171-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]