GgaEX1027847 @ galGal4
Exon Skipping
Gene
ENSGALG00000001109 | GTSF1
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
Coordinates
chr27:1056370-1064844:+
Coord C1 exon
chr27:1056370-1057218
Coord A exon
chr27:1062233-1062324
Coord C2 exon
chr27:1064758-1064844
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCATTCTTCAATTATATTAGATG
3' ss Score
5.51
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ACTTATTCTTTCTACCTCTTGTCCAGCTGGGCCTTGGCCCTTCCTAACCCTATCCCTATATTCGTCCCACAACACTCATCCCCACTGCCTGTGCATTTTCTTTTTGTTCTCTAGTTTGATCAGCAGATTCTGGTTCAGCCATACTGATCTCTTGCCTTCAATACTTCGAATTAATTGCTTAAAACTCAATTTACTGACAGGTACCAATGGCGGTGGGCGCACAGAGCGGGATAAGGCCGGGCAAGATGGCGCCCCACCGGGAGCAGAGGCTGTTGCTAGGAGACACCGCGCAAGCGCGGGGGGAGAAGTGGTTGCTAGGAGACCACCGCGCATGCGCAGAGCGTAGCGTGGCAGCACGGCAGGTCGTTTCCGGCTGAGGGGCTGAGGAGAGGCGGTGGTGGTGGCGTTCGACTCCGCTCCGCTTCTCTCTTGATGCCCTGAGGGTCTTCCCGGCCCGGTACTGCAGTCTTTCCTCACTATGGAGGCAGAGGATGACTTGG
Seq A exon
ATGATCCAGAGAGATTAATACAGTGTCCATATGATAAACAGCATCAAATCAGAGCCTGTCGTTTTCCCTATCATCTTGTAAAGTGCAGGAAG
Seq C2 exon
CGTATTGTTCCTCTGGCTTCCAAAGAGATGAGGTGAATGCTGTAAGCACATGGCAGGCACCTCCATGTGATGAAGACTGGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001109_MULTIEX1-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF052537=zf-U11-48K=WD(100=87.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCCGCTTCTCTCTTGATG
R:
CCCAGTCTTCATCACATGGAGG
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]