DreEX6008076 @ danRer10
Exon Skipping
Gene
ENSDARG00000099586 | GTSF1 (2 of 2)
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
Coordinates
chr7:61567204-61576181:+
Coord C1 exon
chr7:61567204-61567435
Coord A exon
chr7:61567534-61567631
Coord C2 exon
chr7:61576055-61576181
Length
98 bp
Sequences
Splice sites
3' ss Seq
AATTGTCACGTGTTTCACAGATT
3' ss Score
8.02
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AATATACATGTAAATATCAACTACCAACACAATAAAACACAACCTTGTAGCTATTTAGCATTATATCTCATTACTGGTAAGTTTTGATGAGCCTCGCGACTTGCAGGTGTTTTGCTAATAATGACTGTGCGCTTTTAACATTTAAAACAGCTGGGAAGTGCGGCTGAGATGTCGAAGGCAAAAAGAAAACATGAGATGGCAGTTAAAGCTCCACGATGGGAAGAAGCTCAAG
Seq A exon
ATTTCTGCAACCCTGATAAACTGCTGCTGTGCCCATATGATCCACATCATCTGATCCGAGCCTGCCGGTTCCCCTACCACCTCATCAAATGCAGGAAG
Seq C2 exon
AATCACCCTGAATTGGTTGGTGAATTATGGACATGTCCATTCAATGCACGCCACCTGATGAAGAAAAATGAGCTGTCCCATCACATCTCAACATGTGTAGATCGATGCTCTGTTACTGAAACCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099586-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF052537=zf-U11-48K=WD(100=81.8)
C2:
PF052537=zf-U11-48K=WD(100=62.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATGAGCCTCGCGACTTG
R:
TTCACCAACCAATTCAGGGTG
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]