BtaEX6020245 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018085 | GTSF1
Description
Bos taurus gametocyte specific factor 1 (GTSF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034273]
Coordinates
chr5:25730497-25738467:+
Coord C1 exon
chr5:25730497-25730544
Coord A exon
chr5:25736462-25736562
Coord C2 exon
chr5:25738341-25738467
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTTCTGTCTTTCAGTCG
3' ss Score
10.8
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGCACTTTGGATTTGGCTCCTTAATTCCCAACATGGAAGAAACTTACA
Seq A exon
TCGATACTCTGGACCCTGAAAAGCTGTTACAATGCCCCTATGATAAAAACCACCAGATCAGGGCCTGCAGGTTTCCTTATCATCTTATCAAGTGCAGAAAG
Seq C2 exon
AATCATCCTGATGTCGCAAACAAACTGGCAACTTGTCCCTTCAATGCTCGCCATCAGGTTCCTCGGGCTGAAATCAGTCATCATATCTCAAGCTGTGATGACAAAAGCTGTATTGAGCAGGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018085-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
PF052537=zf-U11-48K=WD(100=79.4)
C2:
PF052537=zf-U11-48K=WD(100=62.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTTTGGATTTGGCTCCT
R:
TCCTGCTCAATACAGCTTTTGTCA
Band lengths:
170-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]