DreEX0005588 @ danRer10
Exon Skipping
Gene
ENSDARG00000097827 | LRP1 (2 of 2)
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr11:1858551-1864183:+
Coord C1 exon
chr11:1858551-1858644
Coord A exon
chr11:1858787-1858816
Coord C2 exon
chr11:1864039-1864183
Length
30 bp
Sequences
Splice sites
3' ss Seq
ACTGCGTCTCTTTTCCGTAGGCT
3' ss Score
11.56
5' ss Seq
GCGGTAACG
5' ss Score
6.71
Exon sequences
Seq C1 exon
GAACAGCTTCGATAGTGATTCCAGTGATTTTACTGATTCTGCTGGTGTTGTTGATTGGCGGAGCGGCGTTGTGGTACAGAAAGAGAATGAGAGG
Seq A exon
GCTTGGCAAATCCCGCTCCAAACGGCCGCG
Seq C2 exon
AGCCAAAGGCTTCCAGCATCAGAGGATGACCAACGGCGCCATGAATGTGGAGATCGGGAACCCGGCCTATAAAATATATGAAGGAGAGCAGGACGATGATGTTGGAGAACTGCTGGACGCAGACTTCACACTGGATCCTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097827_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.545 C2=0.218
Domain overlap (PFAM):
C1:
PF142831=DUF4366=FE(25.2=100)
A:
PF142831=DUF4366=FE(9.3=100)
C2:
PF142831=DUF4366=PD(26.0=65.3)
Main Inclusion Isoform:
ENSDART00000164394fB498
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGTGTTGTTGATTGGC
R:
CCCGATCTCCACATTCATGGC
Band lengths:
114-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]