DreEX0005882 @ danRer10
Exon Skipping
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41108235-41110978:-
Coord C1 exon
chr11:41110850-41110978
Coord A exon
chr11:41110282-41110383
Coord C2 exon
chr11:41108235-41108363
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCCTCCTGTGTTCAGCAT
3' ss Score
7.86
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CGTGTCCGCAGGGTTTGTACGGCTCAGGCTGTGAGCATCAGTGTGAGTGTCTGAATGGTGGAGTTTGTCTCTCAGACTCGGGATCCTGTCAGTGTCCAGCCGGATTCATTGGAGCTCAATGCAATCAAA
Seq A exon
CATGTCCAGCGGGTCGCTATGGTCTGGACTGTGCTCATGTGTCAGCGTGTGGGACAGGAGTGAGGAATGATCCGGCTACAGGAAGATGCACTGCACATCAAG
Seq C2 exon
TCTGTCCTCCAGGTTGGTTTGGTTCTGGCTGTTCTCAGCGTTGTGACTGCAGTAACAGAGGTGTGTGTGACGGAGTCTCTGGAAACTGCTCATGTGCTCTCGGCTGGACCGGCAAACACTGTGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808-'35-33,'35-31,36-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.0=36.4),PF126612=hEGF=WD(100=29.5)
A:
NO
C2:
PF126612=hEGF=WD(100=29.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGTTTGTACGGCTCAG
R:
TATCACAGTGTTTGCCGGTCC
Band lengths:
248-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]