MmuEX6098371 @ mm9
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:153642043-153643884:+
Coord C1 exon
chr4:153642043-153642171
Coord A exon
chr4:153642685-153642813
Coord C2 exon
chr4:153643756-153643884
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCACCTGCCCCTCTCCACAGCCT
3' ss Score
11.2
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GATGCCCATCTGGGCGCTATGGGCCAGGCTGTGAACAAATTTGTAAGTGTCTCAATGGTGGGACCTGCGATCCAGCCACGGGAGCCTGCTACTGCCCTGCTGGGTTCCTTGGGGCCGACTGTAGCCTTG
Seq A exon
CCTGTCCACAGGGTCGCTTCGGCCCCAGCTGTGCCCACGTGTGTACATGCGGGCAAGGGGCGGCATGTGACCCAGTGTCGGGGACTTGCATCTGTCCTCCCGGGAAGACGGGAGGCCATTGTGAGCGCG
Seq C2 exon
GCTGTCCCCAGGACCGGTTTGGCAAGGGCTGTGAACACAAGTGTGCCTGCAGGAATGGGGGCCTGTGTCATGCTACCAATGGCAGCTGCTCCTGCCCCCTGGGCTGGATGGGGCCACACTGTGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(32.6=31.8),PF079748=EGF_2=WD(100=65.9)
A:
NO
C2:
PF079748=EGF_2=WD(100=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGGCCAGGCTGTGAAC
R:
CGTGCTCACAGTGTGGCC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: