DreEX6077657 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35481203-35483262:+
Coord C1 exon
chr15:35481203-35481331
Coord A exon
chr15:35482927-35483052
Coord C2 exon
chr15:35483134-35483262
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTGTTTGTGTCACAGGTT
3' ss Score
10.95
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GATGCCCTGCTGGCTTTTTCGGTGAGCTCTGTGCTCAACCATGCGTCTGTAAACAAGGGCACCAGTGTGATCACGTGACTGGAAAGTGTGAGTGTCCTCCTGGTTACCATGGCAACCAGTGTGAAAAAC
Seq A exon
GTTGCGAGTCTGGCCGTTTTGGACGTGATTGTGCAGGTGTGTGTGATTGTGATGGGGCATCCTGTGATCCAACCACTGGACAGTGTCTCTGTCCTCCTGGAAAGACTGGAGAACGCTGTGAGAAAG
Seq C2 exon
TTTGTGACAGCAGGTATTATGGCCCGGACTGCTCTTTCCAGTGTGAGTGTGTTCATGGAGGACAATGTGACCCTCAAACTGGACACTGCTCCTGTCCTCAAACCTGGCTAGGGCCTACCTGTGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'52-52,'52-51,53-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(65.9=65.9)
A:
PF0005319=Laminin_EGF=PD(31.8=32.6),PF0005319=Laminin_EGF=PU(62.2=65.1)
C2:
PF0005319=Laminin_EGF=PD(35.6=36.4),PF079748=EGF_2=WD(100=63.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTTTTTCGGTGAGCTCT
R:
TGTTCACAGGTAGGCCCTAGC
Band lengths:
247-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]