GgaEX1002276 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21868828-21872628:-
Coord C1 exon
chr9:21872500-21872628
Coord A exon
chr9:21871730-21871855
Coord C2 exon
chr9:21868828-21868956
Length
126 bp
Sequences
Splice sites
3' ss Seq
TATGGGGCTCTTCCCTCCAGGCT
3' ss Score
8.98
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GGTGCCCCCCCGGGTTTTATGGGCTGAGCTGCCTTCATGCATGTGCCTGTAAAAACGGAGCGAGCTGCGATGCCGTGATGGGACAGTGCATTTGTCCCTCGGGGTACCATGGTATCCACTGTGAGAAAG
Seq A exon
GCTGTGCCAGTGGGCGCTTCGGTGAGCGGTGCCAGCGCCAGTGCGACTGTGGAGGAGCTCCCTGCGACCCGGCCACTGGGAAATGCCTCTGCCCACCTGGAAAGACTGGGGACAAGTGTGACATTG
Seq C2 exon
GCTGCCGGTCTGACCAGTACGGCCCCGACTGCTCTCTGCGATGCCAGTGTGCCAGCAAGTCCCAGTGCAACCCATACAATGGGAAATGTGTCTGTCCAGCCACGTGGATGGGGCCAACCTGCAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'33-40,'33-39,34-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF079748=EGF_2=WD(100=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTTTTATGGGCTGAGCTG
R:
CTTCCTTGCAGGTTGGCCC
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]