GgaEX6046679 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21874751-21876575:-
Coord C1 exon
chr9:21876447-21876575
Coord A exon
chr9:21875347-21875472
Coord C2 exon
chr9:21874751-21874879
Length
126 bp
Sequences
Splice sites
3' ss Seq
GAAGTCTGTGTTTCCTTCAGCTT
3' ss Score
7.62
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGTGTCCAGAAGGTACTTACGGTTCAAACTGCCAAAAATCCTGTAAATGCATGAATGGAGGCCATTGCGACCCAGTGTCGGGAACTTGTGATTGCGCGCCTGGTTTCATTGGAGCCGACTGTAGTAAAA
Seq A exon
CTTGCCCAGAAAATCGATACGGGAAGGACTGCGCCCTGTTCTGTGCATGCGGTAAAGGTCATTGTGACCCACGGACTGGCAGCTGTACCTGTCCTCCTGGCCAAATGGGACCTGGCTGTCAGCAAG
Seq C2 exon
TGTGTCCCCAGGGACGGTTCGGCCCCAGCTGCCGCCTGACATGCAGCTGTCAGAACGGTGCTATCTGTGACCACGTGGATGGCAGCTGCACTTGTGGACTTGGCTGGACAGGAAAATCGTGTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'29-34,'29-33,30-34=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTTACGGTTCAAACTGCCA
R:
TCACACGATTTTCCTGTCCAGC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]