DreEX6077661 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35469742-35478031:+
Coord C1 exon
chr15:35469742-35469870
Coord A exon
chr15:35470162-35470290
Coord C2 exon
chr15:35477903-35478031
Length
129 bp
Sequences
Splice sites
3' ss Seq
CATCTATGTTTTATTCTCAGGTT
3' ss Score
9.46
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
GATGTCGAGAGGGCACTTATGGCCCCTACTGTAAGAAGAGGTGTAGCTGTGCCAACGGAGGCCGATGCGACTTCAGAAACGGCTCCTGCATCTGTCAGCCAGGATATTTTGGACCCAACTGCAGCATCA
Seq A exon
GTTGTCCCTCAGGTCACTACGGGAGAGACTGTGCTCAGGTGTGTTCATGTGGGGAGAAAGGACAGTGCCACCCAGAGACAGGGAGGTGTAACTGCGCCCCTGGTACAACAGGACTGTCCTGTGAACAAA
Seq C2 exon
TGTGTCCAAGGGGCCGCTATGGAGTGCAGTGTCGGAGTTTCTGTACTTGTGCAAACGGAGGAGTGTGTGACCCTGTGAATGGGACGTGCAGATGTGGGCTGGGCTGGACAGGACAACATTGTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'47-47,'47-46,48-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.0=36.4),PF126612=hEGF=WD(100=29.5)
A:
PF0005319=Laminin_EGF=PU(70.2=75.0)
C2:
PF0005319=Laminin_EGF=PD(27.7=29.5),PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCGAGAGGGCACTTATGG
R:
ACAATGTTGTCCTGTCCAGCC
Band lengths:
250-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]