DreEX0005883 @ danRer10
Exon Skipping
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41105350-41108363:-
Coord C1 exon
chr11:41108235-41108363
Coord A exon
chr11:41107751-41107879
Coord C2 exon
chr11:41105350-41105478
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTTATTAGAGT
3' ss Score
8.6
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
TCTGTCCTCCAGGTTGGTTTGGTTCTGGCTGTTCTCAGCGTTGTGACTGCAGTAACAGAGGTGTGTGTGACGGAGTCTCTGGAAACTGCTCATGTGCTCTCGGCTGGACCGGCAAACACTGTGATAAAG
Seq A exon
AGTGTCCTGATGGCAGCTTTGGGCCTGACTGCTCTCTTCAGTGTTCCTGTCAGAATAACAGCACATGTGACCGAGTGACAGGAAGTTGTCATTGTCGTCCAGGATATTACGGTCATCTGTGTGAACACG
Seq C2 exon
CGTGTCCGGCTGGTCTCTTCGGCTCTGGGTGTCAGCAGCAGTGTGACTGTATGAACGGAGCCTCCTGTCATCCGGATACAGGACAGTGTGTGTGTCCCGCTGGAGTCCACGGCCCGCGCTGTCAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808-'37-36,'37-34,38-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=29.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTCCAGGTTGGTTTGG
R:
GACTCCAGCGGGACACACA
Band lengths:
235-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]