BtaEX0021922 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50801218-50802070:+
Coord C1 exon
chr16:50801218-50801346
Coord A exon
chr16:50801586-50801714
Coord C2 exon
chr16:50801942-50802070
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACCCCCCGGCCCCTCCCCAGCCT
3' ss Score
5.93
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCTGCCCCCAGAATCGGTTTGGTGTGAATTGTGAGCATGCGTGCTCCTGCAGGAATGGGGGCCTGTGTCACGCCACCAACGGCAGCTGTTCCTGTGGCCTGGGCTGGACTGGGCCACACTGCGAGCTGG
Seq A exon
CCTGCCCCGCCGGGCGCTACGGTGCCGCCTGCAGCCTCGAGTGCTCCTGCCACAACCACGGGGCCTGTGAGCCCACGTCGGGGGCCTGCCGCTGCGGCCCCGGCTTCTACGGCCAGGCCTGCGAGCACT
Seq C2 exon
CCTGTCCCCCCGGCTTCCATGGGGCTGGCTGCCAGCAGACGTGCCAGTGTCAGCATGGCGCCCCCTGCGACCCTGTCAGCGGCCAGTGCCTCTGCCCTGCTGGCCTCCATGGCCAGTTCTGCGAGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'36-40,'36-39,38-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAATCGGTTTGGTGTGA
R:
CGCAGAACTGGCCATGGAG
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development