GgaEX1002280 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21872500-21874879:-
Coord C1 exon
chr9:21874751-21874879
Coord A exon
chr9:21872846-21872974
Coord C2 exon
chr9:21872500-21872628
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTCCACACGTGGCCAGCAGAAT
3' ss Score
2.7
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TGTGTCCCCAGGGACGGTTCGGCCCCAGCTGCCGCCTGACATGCAGCTGTCAGAACGGTGCTATCTGTGACCACGTGGATGGCAGCTGCACTTGTGGACTTGGCTGGACAGGAAAATCGTGTGAGAAAG
Seq A exon
AATGTCTCCCTGGCAAGTACGGCCCCAACTGCAGCTTGGACTGCTCATGCCAGCACAACGGCACCTGCGACAGGTTCACGGGCTGCTGCCTCTGCCCCGCGGGGTTCTACGGGCGCTCCTGTGAGCACG
Seq C2 exon
GGTGCCCCCCCGGGTTTTATGGGCTGAGCTGCCTTCATGCATGTGCCTGTAAAAACGGAGCGAGCTGCGATGCCGTGATGGGACAGTGCATTTGTCCCTCGGGGTACCATGGTATCCACTGTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'31-38,'31-37,32-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF079748=EGF_2=WD(100=61.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGCCGCCTGACAT
R:
CTTTCTCACAGTGGATACCATGGT
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]