DreEX6077659 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35477903-35481331:+
Coord C1 exon
chr15:35477903-35478031
Coord A exon
chr15:35480993-35481121
Coord C2 exon
chr15:35481203-35481331
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATTATATGTCTGTGTGTTAGTTT
3' ss Score
6.7
5' ss Seq
ACCGTATGG
5' ss Score
2.34
Exon sequences
Seq C1 exon
TGTGTCCAAGGGGCCGCTATGGAGTGCAGTGTCGGAGTTTCTGTACTTGTGCAAACGGAGGAGTGTGTGACCCTGTGAATGGGACGTGCAGATGTGGGCTGGGCTGGACAGGACAACATTGTGAAAAAG
Seq A exon
TTTGTGTCTCAGGTCACTATGGTGTGAACTGTGAGCAGAAGTGTGTCTGCCAGAATAACGGTACATGCGATCGTTTTACCGGATGCTGCTCTTGCCGGTCCGGATACTACGGCCCCGCCTGCCAACACC
Seq C2 exon
GATGCCCTGCTGGCTTTTTCGGTGAGCTCTGTGCTCAACCATGCGTCTGTAAACAAGGGCACCAGTGTGATCACGTGACTGGAAAGTGTGAGTGTCCTCCTGGTTACCATGGCAACCAGTGTGAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'49-50,'49-49,51-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(27.7=29.5),PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF079748=EGF_2=WD(100=70.5)
C2:
PF0005319=Laminin_EGF=PU(65.9=65.9)
Main Skipping Isoform:
ENSDART00000166685fB7265
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTATGGAGTGCAGTGTC
R:
TTTCACACTGGTTGCCATGGT
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]