MmuEX6098374 @ mm10
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154266451-154267561:+
Coord C1 exon
chr4:154266451-154266579
Coord A exon
chr4:154267190-154267318
Coord C2 exon
chr4:154267433-154267561
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTCTCACGCTACAGCCT
3' ss Score
6.64
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGTGCCTTCCTGGACACCATGGGGCTGGTTGCCGGCTCAACTGCAGTTGCCTTAATGGGGGCACATGTGACCGTCTTACTGGCCACTGCCGCTGCCCAACTGGCTGGACTGGGGACAAGTGTCAGAGCC
Seq A exon
CCTGCGTCAGTGGCATGTTTGGGGTTCACTGTGAGGAGCACTGTGCCTGCCGGAAAGGTGCCACCTGTCACCATGTCACGGGGGCCTGCCTCTGTCCCCCAGGATGGAGGGGCTCACACTGTGAACAGG
Seq C2 exon
CCTGTCCACGTGGCTGGTTTGGAGAGGCCTGTGCTCAGCGTTGCCACTGCCCGCCTGGTGCCTCCTGCCACCATGTCTCTGGAGAGTGCCACTGTCCACCCGGCTTCACTGGGCCTGGCTGTGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.5)
A:
NO
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTTCCTGGACACCATG
R:
ACAGCCAGGCCCAGTGAA
Band lengths:
250-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types