DreEX0007718 @ danRer10
Exon Skipping
Gene
ENSDARG00000099080 | SBNO1
Description
strawberry notch homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:22973]
Coordinates
chr10:44434485-44437464:-
Coord C1 exon
chr10:44437137-44437464
Coord A exon
chr10:44434712-44434750
Coord C2 exon
chr10:44434485-44434585
Length
39 bp
Sequences
Splice sites
3' ss Seq
GCCGCTGCTCTTCTTTTCAGAGA
3' ss Score
9.8
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GAGAAGCCTCAGCCCTCCACCACCACCTTTGTGCTGAATCAGCTGAATCAGTTGCCTTCGCTGGGAACCATCGTGGTCTCCAAACCCTCGACGGGCAGCAGCACCAGACAGACCATCACCGTCACCAAGGTGCTGCACAGCTCCTCTCCAGCACAGCGCAGCTCCGCTTCTCCCAGCGTCTGCACTGCGGCTCCGGCAAACACTGAGCAGATCCGGCTGAAGGACCTGCTGAGGAGCAGCAGCCTGAAGAGCAGCAGTCTGGGGGAGCTAATGAAGCTGAAGCCCCCGGCAGACATCGCACCACCTGTCGCCACCGCCACTGGCACTA
Seq A exon
AGATTATTCTGGTCTCCACTAAGATGATGAGCAGATCAG
Seq C2 exon
CGGAAGTAAACAACGGCTTGAAGAAAGAAGTGTCCAGCAAAGATGTAGCAAGAATCTGGATCAACGATGACATGAAAATGCGCAGCTTCTCACCTGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099080_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=0.071 C2=0.382
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000160231fB672
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACATCGCACCACCTGTC
R:
AAGCTGCGCATTTTCATGTCA
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]