GgaEX0004436 @ galGal4
Exon Skipping
Gene
ENSGALG00000003392 | SBNO1
Description
protein strawberry notch homolog 1 [Source:RefSeq peptide;Acc:NP_001026640]
Coordinates
chr15:5004132-5006446:+
Coord C1 exon
chr15:5004132-5004441
Coord A exon
chr15:5005925-5005969
Coord C2 exon
chr15:5006346-5006446
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTTGATTTTCTTTTTTTCAGAAA
3' ss Score
8.56
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CAACCACCGTCCACCACAACCTTTGTGCTGAATCAAATAAATCAGCTTCCAACGTTGGGGACTACAATAGTGATGACAAAAACAACACCAGTTACAACTACGAGGCAGACTATTACTGTAGCAAAAATCATTCAGACCAGCACAACTACTCGACCCTCGGTTGCAGCACCAGCAGTACGGAATGCCTTGACCACTGCACCTTCAAAGGACCAGATCCAGCTGAAAGATCTGCTGAAGAATAATAGTCTTAATGAACTAATGAAATTGAAGCCACCTCCTAATATTGCGCAACCAGTAGCAACAGCAGCGA
Seq A exon
AAATAATTGTAGTTCCACCTAAGGTGGTAAATGCCACCAGACCAG
Seq C2 exon
CTGATCTAAGCAATGGTGCGGTGAAGAAGGAGGCTTCCACAAAAGAGGTAGCAAGAATATGGATAAACGATGTCAAAATGAGAAGTTTTTCACCTACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003392_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=0.188 C2=0.353
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000005363fB481
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGATCCAGCTGAAAGATCTG
R:
TCCTTCTTCACCGCACCATTG
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]