DreEX0007857 @ danRer10
Exon Skipping
Gene
ENSDARG00000086539 | SH2D3A
Description
SH2 domain containing 3A [Source:HGNC Symbol;Acc:HGNC:16885]
Coordinates
chr1:58260480-58264595:-
Coord C1 exon
chr1:58264477-58264595
Coord A exon
chr1:58263103-58263208
Coord C2 exon
chr1:58260480-58260654
Length
106 bp
Sequences
Splice sites
3' ss Seq
AAGACTGAAATCCTGCACAGGGT
3' ss Score
2.41
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTTTGTGATTGTGTTGTTTTGTGCAGATCATGAACAATCACTCGATCTCGCGCTGGCTGAACCGCATCGGTCTGCCTCAATACACCAGCGCTCTGGAGAAACAGTACTACGGCCTGGAG
Seq A exon
GGTCTCCAATCTGTGACTGAAGAGGATCTCAGATTAATGGGGGTTGAAGATCCAGATCACAGAGTGAAGATTCTCGCAGAGCTGCAGAAACAGCAGTGTGATACAG
Seq C2 exon
AGAATAACTGTACCACCGGCACGATGAGCAGCAGACACTCGCTGGACCTCAAGCGCACTGACCTCTTCCGTCACAGCATCATCCCGAGGCTGCGTCGCCGTGATAAAAGAGTCTCCGCCTCCTGCATCCAGCTCCGCCCTGAAGACCACGCCCCCTGCAGCAAACACAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086539-'0-2,'0-0,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.222 C2=0.390
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=PU(47.5=96.7)
A:
PF0053625=SAM_1=PD(49.2=83.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAATCACTCGATCTCGCGC
R:
GTTTGTGTTTGCTGCAGGGG
Band lengths:
258-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]