DreEX0008428 @ danRer10
Exon Skipping
Gene
ENSDARG00000045837 | SSC5D (2 of 2)
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr4:5401533-5406943:+
Coord C1 exon
chr4:5401533-5401841
Coord A exon
chr4:5404007-5404315
Coord C2 exon
chr4:5406638-5406943
Length
309 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCTTTTGCATTAGCCA
3' ss Score
4.93
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCAGAACTAGACTGGTGAGCGGCATCAACTCTTGTTCTGGACGAGTGGAGGTTTTCCATAACGGCTTATGGGGAACAGTGTGTGATGATTACTGGGGTCTGACAAACGCTGCAGTGGTGTGTAGAGAGCTGGGATGTGGAGACGTGATTGAGGCAAAGAGTAATGCTTATTTTGCAGAAGGTTCAGGGCAAATATTGATGGATGATGTGAACTGCTCCAGAGATGATAATGCATTGAGTAAATGTGAATTTGCTGGATGGGGAGTGCACAACTGTGTTCATTCAGAGGACGCTGGAGTCGTCTGTCAGG
Seq A exon
CCAAAATGTGGCTGTTTAACAACTTTGACAGTTGTTCTGGGACAGTGGCGGTTTTCCATAATGCATCGTGGGGAGCAGTGTGTGCCGATGATGACTGGGATCTACCGGATGCTACAGTGGTGTGCAGAGAGATAGGATGTTGGAAAAGTGTTAGCGTTTTTACTGATTATAGTTGGAGCAGCACACCTCTGCGAACATGGATGAACAATGTGAGCTGCAGTGGAGACGAAACGGCTTTGAGCACCTGTGCATTTCAGGGATGGGGACCGGATAACTGTGATCCAAAATATGCAGGAGTCATCTGCCGCC
Seq C2 exon
TCCCTGTCAGGCTGACGGGTGGAAGAGACGCATGTTCTGGACTTGTGGAGGTTTTTCATGACGGTCAGTGGGGGACGGTGAATGCTGATGGCTGGGATCTGGCAGACGCTGCAGTGGTGTGTAGAGAGATGGGATGTGGAGATGCTGTACAGGCAACGGGCGGTGCTTTTGGACGAGGAATTGGTCCAATATGGATGACTTTAGTCGACTGTGTTGGCAGTGAGTCTTCCCTAATACAATGTAGCTTAGATCGATGGCTGCCAAATCACGTCAACCATCTGAATGATGCTGGAGTCGTCTGCACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045837_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
PF0053013=SRCR=WD(100=93.3)
C2:
PF0053013=SRCR=WD(100=94.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCGGCATCAACTCTTGT
R:
TCCACAAGTCCAGAACATGCG
Band lengths:
344-653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]