BtaEX0007871 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019669 | CD163
Description
Bos taurus CD163 molecule (CD163), mRNA. [Source:RefSeq mRNA;Acc:NM_001163413]
Coordinates
chr5:102251219-102255297:+
Coord C1 exon
chr5:102251219-102251539
Coord A exon
chr5:102254228-102254548
Coord C2 exon
chr5:102254977-102255297
Length
321 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTTTCCCTCTTACAGAGG
3' ss Score
10.41
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATGGATCTGATTTGGAGATGAGGCTGATGAATGGAGGAAACCGGTGCTCAGGAAGAATAGAGATCAAATTCCAGGGCCAGTGGGGAACAGTGTGTGACGATAACTTCAACTTGGATCACGCTTCTGTGGTTTGTAAACAGCTTGGATGTGGAAGTGCTGTCAGTTTCTCTGGCTCAGCTAATTTTGGAGAAGGGTCTGGGCCAATCTGGTTTGATGATCTGGTATGCCATGGAAATGAGTCAGCTCTCTGGAACTGCAGACACGAAGGATGGGGAAAGCACAACTGTGATCACGCTGAAGATGCCGGAGTGATTTGCTTAG
Seq A exon
AGGGAGCTGACCTGAGCCTGAGACTGGTAGATGGAGTCACCAAGTGTTCAGGAAGATTAGAAGTGAGATTCCAAGGAGAATGGGGGACAGTGTGTGATGATGGCTGGGACAGTGATGATGCTGCTGTAGCCTGTCAGCAATTGGGATGTCCGACTGCCATCACTGCCGTCGGTAGAGTCAATGCCAGTGAGGGAACTGGACACATTTGGCTTGACAGTGTTTCCTGCCAAGGACATGAATCTGCTGTCTGGCAGTGCAGACATCACGAATGGGGAAAGCATTACTGCAATCATAACGAAGATGCTGGTGTGACCTGTTCTG
Seq C2 exon
ATGGATCAGATCTCGAACTGAGACTCAAAGGTGGAGGTAGCCGCTGTGCTGGGACAGTGGAGGTGGAAATTCAGAAACTGATAGGGAAAGTGTGTGACAGAAGCTGGGGACTGAAAGAAGCTGACGTGGTTTGCAAGCAGCTGGGATGTGGATCTGCGCTCAGAACATCCTATCAAGTTTATTCTAAAATTCAGGCAACGAACACATGGCTGTTTTTAAACAACTGCAATGGAAATGAGACTTCTATCTGGGACTGCAAGAACTGGCAATGGGGTGGGCTTAGTTGTGAACACTATCATGAAGCCAAAGTTACTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019669-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
PF0053013=SRCR=WD(100=90.7)
C2:
PF0053013=SRCR=WD(100=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCTGGAACTGCAGACAC
R:
ATTGCCAGTTCTTGCAGTCCC
Band lengths:
349-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development